EukCC is a command line too written in python3 to estimate completeness and contamination of novel eukaryotic MAGs.


Version 1 is deprecated

This is the documentation for version 2 of EukCC. This is not compatible with the now deprecated version 1. You can find the documentation for versions 0.2-version1 here:

Please cite

Saary, Paul, Alex L. Mitchell, and Robert D. Finn. “Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC.” Genome biology 21.1 (2020): 1-21.

The project is hosted on GitHub: